PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g13170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 389aa    MW: 44093.7 Da    PI: 8.8168
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g13170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.8e-19199300199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                     f+k+l++sdv++++r+vlpkk ae++   ++++e++ l++ d++g   W++k+++  +++s++yvl+ ++ +Fv+ +gL+ gD+++++  ++ ++
  Vang04g13170.1 199 FKKELKNSDVSSLRRMVLPKKAAETFlpPLDSKEGILLKMDDKDGtHAWSFKYRFwpNNNSRMYVLE-NTGDFVSTHGLRFGDTIMIY--QHiEN 290
                     89*********************999**77777999*********99******9989999999***9.********************..56688 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      ++v++++++
  Vang04g13170.1 291 NNYVIQARKA 300
                     8889888775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-26192306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-20197296IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-23197299No hitNo description
SMARTSM010191.4E-18199301IPR003340B3 DNA binding domain
PROSITE profilePS5086310.137199301IPR003340B3 DNA binding domain
PfamPF023621.2E-15199300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MVSKWSAERV WESTYDLRSE ATVQVKEQQN PQLYSAARPT GTKNKKTITW FISLPSGQLP  60
FKSNHHVLTS SHSLPHGSLS VNHCTMHKGT PQYCKILKWV VSERTHAMHP SFEGQRENPP  120
SHTPAAILPR RECVKKRLPR QRRSTVTTTP TLFLPSKQHD PNLPSSTPSA SSSLQSVKPS  180
TPLRLAAREI DHRNLRFLFK KELKNSDVSS LRRMVLPKKA AETFLPPLDS KEGILLKMDD  240
KDGTHAWSFK YRFWPNNNSR MYVLENTGDF VSTHGLRFGD TIMIYQHIEN NNYVIQARKA  300
SEEDEFVEQS SETMNDMFPS DLEVNKPGCF NINYPAVNDA GMSFIYETTF SNDSPLDFLG  360
GSMTNFSRIG PADETFGSVE NLSLDDFY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496765.11e-158PREDICTED: B3 domain-containing transcription factor FUS3-like
SwissprotQ9LW312e-74FUS3_ARATH; B3 domain-containing transcription factor FUS3
TrEMBLA0A0L9U6C20.0A0A0L9U6C2_PHAAN; Uncharacterized protein
STRINGGLYMA16G05480.21e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98582838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.15e-75B3 family protein